PPDB

 The Plant Proteome Database

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AT2G18110.1   Translation elongation factor EF1B/ribosomal protein S6 family protein
Lab Annot. elongation factor 1-beta, EF-1-beta
Mapman: 29.2.4 protein.synthesis.elongation
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G30230.1 11Arabidopsis thaliana8E-1342319397383 (201)_
AT1G30230.2 11Arabidopsis thaliana5E-1332319397373 (191)_
AT5G12110.1 11Arabidopsis thaliana2E-732355569137 (113)_
Os03g29260.1 6Oryza sativa1E-9522672849 (9)_
Os03g29260.2 7Oryza sativa1E-95226728417 (17)_
Os07g42300.2 6Oryza sativa3E-93229708549 (49)_
GRMZM2G031545_P04 3.21Zea mays9E-1052297386128 (109)_
Zm00001eb327430_P002 agpv5Zea mays9E-10522973860 (0)_
v1_GRMZM2G031545_P04 4a53Zea mays9E-1052297386116 (115)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF5102(1) EF1_GNE(1)
TargetP: Cytoplasm (Class 2 C0.106; M0.129; S0.031; _0.759)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 231 aa (-cTP 193)
Molecular Weight 25.27 kDA(-cTP )
PI 4.49(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1414Detail       leaf [A. thaliana] total leaf tissue -114 rep1tR2 wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1466Detail       leaf [A. thaliana] co-IP GST stroma clpc1 x clps (rep. 1)
1468Detail       leaf [A. thaliana] co-IP GST stroma clpc1 x clps (rep. 2)
1470Detail       leaf [A. thaliana] co-IP GST stroma clpc1 x clps (rep. 3)
1541Detail       leaf [A. thaliana] Thylakoids plastoglobuleM-48
1724Detail        [A. thaliana]  
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2208Detail       leaf [A. thaliana] total leaf tissue Clp P5 strepII
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2253Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

 19200160(flower-stage 12)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
19888209(leaves)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help