PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT2G17870.1 cold shock domain protein 3

Lab Annot.

cold-shock DNA-binding protein
Mapman: 20.2.2 stress.abiotic.cold

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G36020.1 11 Arabidopsis thaliana 6E-107 313 60 69 21 (8) _
AT4G36020.3 11 Arabidopsis thaliana 6E-107 313 60 69 0 (0) _
AT4G36020.2 11 Arabidopsis thaliana 2E-83 275 56 66 0 (0) _
Os01g36570.1 7 Oryza sativa 3E-16 69 50 66 0 (0) _
Os03g60600.1 7 Oryza sativa 4E-14 209 28 38 0 (0) C
Os10g39820.1 7 Oryza sativa 9E-14 184 30 40 0 (0) C
Zm00001eb208310_P003 agpv5 Zea mays 8E-37 206 49 59 0 (0) M
v1_GRMZM2G389768_P02 4a53 Zea mays 1E-36 206 50 59 87 (87) M
Zm00001eb208310_P001 agpv5 Zea mays 1E-36 206 50 59 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CSD(1) OB_RNB(1) zf-CCHC(7) zf-CCHC_2(6) zf-CCHC_3(7) zf-CCHC_4(7) zf-CCHC_5(7)
TargetP:	Cytoplasm (Class 2 C0.074; M0.153; S0.082; _0.856)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	301 aa (-cTP 291)
Molecular Weight	29.56 kDA(-cTP )
PI	7.41(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1530	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	wild-type (rep. 1)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
2009	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2010	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2225	Detail								leaf [A. thaliana]	total leaf tissue	Clp P3 trap
2226	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2238	Detail								seedlings [A. thaliana]	total tissue	gfs9
2254	Detail								leaf [A. thaliana]	total seedlings	gfs9
2256	Detail								leaf [A. thaliana]	total seedlings	gfs9
2300	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)

Comparative Proteomics Data