PPDB

PPDB	The Plant Proteome Database

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AT2G17730.1 NEP-interacting protein 2

Lab Annot.

NIP1 - interacts with NEP RPOTmp
Mapman: 28.3* DNA.plastid nucleoid interacting

Curated Location

thylakoid (Pubmed: 23198870 18567673 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G17730.2 11 Arabidopsis thaliana 4E-169 231 100 100 0 (0) C
AT4G35840.1 11 Arabidopsis thaliana 5E-148 235 85 92 0 (0) _
AT4G35840.2 11 Arabidopsis thaliana 5E-141 267 74 81 0 (0) _
Os10g39770.1 7 Oryza sativa 5E-84 196 58 77 0 (0) _
Os06g50370.1 7 Oryza sativa 4E-70 197 50 70 0 (0) _
Os07g29600.1 7 Oryza sativa 7E-69 192 51 69 0 (0) C
GRMZM2G052344_P03 3.21 Zea mays 9E-79 196 56 74 0 (0) _
v1_GRMZM2G052344_P03 4a53 Zea mays 9E-79 196 56 74 0 (0) _
Zm00001eb022630_P001 agpv5 Zea mays 9E-79 196 56 74 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF1269(1) DUF456(2) DUF5518(1) FANCL_C(1) Gly-zipper_Omp(2) Gly-zipper_OmpA(1)
TargetP:	Chloroplast (Class 5 C0.323; M0.109; S0.128; _0.194)
Predotar:
Subcel. Location:	Transmembrane
TM-HMM prediction:	1 TMs
Aramemnon:	3 TMs
TAT position:
Length	241 aa (-cTP 202)
Molecular Weight	25.80 kDA(-cTP 21.59)
PI	5.12(-cTP 4.85)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data