PPDB

 The Plant Proteome Database

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AT2G17560.3   high mobility group B4
Lab Annot. transcription factor (HMGB4)
Mapman: 27.3.62 RNA.regulation of transcription.Nucleosome/chromatin assembly factor group
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G17560.2 11Arabidopsis thaliana4E-92138979721 (21)_
AT2G17560.1 11Arabidopsis thaliana4E-92138979721 (21)_
AT4G35570.1 11Arabidopsis thaliana6E-5012360799 (2)_
Os09g37910.2 6Oryza sativa3E-3613052662 (2)_
Os09g37910.3 6Oryza sativa3E-3613052662 (2)_
Os09g37910.4 6Oryza sativa6E-3612352682 (2)C
GRMZM2G066528_P02 3.21Zea mays3E-3712951694 (4)_
Zm00001eb320870_P001 agpv5Zea mays3E-3712951690 (0)_
v1_GRMZM2G066528_P02 4a53Zea mays3E-3712951694 (4)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: HMG_box(1) HMG_box_2(1)
TargetP: Cytoplasm (Class 4 C0.424; M0.133; S0.036; _0.798)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 134 aa (-cTP 65)
Molecular Weight 14.98 kDA(-cTP )
PI 8.98(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1532Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP clps (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

 18463617(suspension cells-phosphorylated proteins)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help