PPDB

 The Plant Proteome Database

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AT2G17200.1   ubiquitin family protein
Lab Annot. ubiquitin protein
Mapman: 29.5.11 protein.degradation.ubiquitin
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G17190.1 11Arabidopsis thaliana055785889 (2)_
AT5G42220.1 11Arabidopsis thaliana3E-118439606 (4)_
AT5G42220.2 11Arabidopsis thaliana3E-118439600 (0)_
Os10g39620.2 7Oryza sativa1E-17956256685 (5)_
Os03g03920.1 7Oryza sativa3E-17353955701 (1)_
Os10g39620.1 7Oryza sativa1E-16654555675 (5)_
Zm00001eb402540_P002 agpv5Zea mays054356690 (0)_
Zm00001eb402540_P003 agpv5Zea mays054356690 (0)_
Zm00001eb402540_P001 agpv5Zea mays054356690 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CUE(2) DUF2407(1) GerD(4) HECW1_helix(3) HOIP-UBA(1) Mod_r(3) NICE-1(1) Rad60-SL
TargetP: Cytoplasm (Class 2 C0.223; M0.057; S0.051; _0.869)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 551 aa (-cTP 528)
Molecular Weight 58.05 kDA(-cTP )
PI 4.81(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

 19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data

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