PPDB

 The Plant Proteome Database

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AT2G17130.1   isocitrate dehydrogenase subunit 2
Lab Annot. IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2); isocitrate dehydrogenase (NAD+)
Mapman: 8.1.4 TCA / org.transformation.TCA.IDH
Curated Location mitochondria

TAIR curated location: mitochondrion14671022
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G17130.2 11Arabidopsis thaliana0367989890 (27)M
AT4G35260.1 11Arabidopsis thaliana03678793298 (128)M
AT4G35650.1 11Arabidopsis thaliana0368808910 (8)M
Os02g38200.1 7Oryza sativa037880884 (4)M
Os04g40310.1 7Oryza sativa033985928 (8)_
Os04g40310.2 7Oryza sativa033984908 (8)_
Zm00001eb246080_P001 agpv5Zea mays037479880 (0)M
GRMZM2G025366_P02 3.21Zea mays0377778764 (25)M
Zm00001eb424940_P002 agpv5Zea mays037777870 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Iso_dh(1)
TargetP: Mitochondria (Class 5 C0.486; M0.584; S0.012; _0.028)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 367 aa (-cTP 306)
Molecular Weight 39.59 kDA(-cTP )
PI 6.14(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1494Detail       leaf [A. thaliana]  
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1651Detail       leaf [A. thaliana] plastoglobules plastoglobulewild-type
2005Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2249Detail       seedlings [A. thaliana] total tissue gfs9
2251Detail       seedlings [A. thaliana] total tissue wild-type
2266Detail       leaf [A. thaliana] stroma Clp Clp C1 wild-type
2272Detail       seedlings [A. thaliana] total tissue wild-type
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2302Detail        [A. thaliana] Clp C1 WT
2303Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 MitoDB(Mitochondrial proteome)
17407188(cotyledon)
19525416(leaf (wt and clpr4-1 mutant))
20706207(contaminants cell cycle interactome (cell culture))
19114538(guard cells Arabidopsis leaf)
21311031(mitochondria)
21173025(root proteome)
21472856(mitochondrial-2DEgels-uncurated)
21472856(mitochondria-LC-MS/MS-uncurated)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)

Comparative Proteomics Data

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