PPDB

 The Plant Proteome Database

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AT2G17033.1   pentatricopeptide (PPR) repeat-containing protein
Lab Annot. pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G17033.2 11Arabidopsis thaliana0505999917 (2)C
AT2G17033.3 11Arabidopsis thaliana04941001000 (0)M
AT2G17033.4 11Arabidopsis thaliana04701001000 (0)M
Os02g02770.1 7Oryza sativa1E-6443433530 (0)C
Os06g07550.1 7Oryza sativa4E-0921423440 (0)C
Os03g19650.3 7Oryza sativa2E-07138244413 (13)C
v1_GRMZM2G164202_P01 4a53Zea mays7E-58423325110 (10)C
Zm00001eb230250_P001 agpv5Zea mays7E-5842332510 (0)C
GRMZM2G164202_P01 3.21Zea mays7E-58423325113 (13)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: PPR(3) PPR_1(3) PPR_2(3) PPR_3(2) PPR_long(1) Smr(1)
TargetP: Chloroplast (Class 5 C0.324; M0.242; S0.007; _0.100)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 504 aa (-cTP 424) (-lTP 399)
Molecular Weight 56.47 kDA(-cTP 47.44)(-lTP 44.91)
PI 9.07(-cTP 8.07)(-lTP 7.173)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help