PPDB

 The Plant Proteome Database

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AT2G17020.1   F-box/RNI-like superfamily protein
Lab Annot. F-box/RNI-like protein
Mapman: 29.5.11.4.3.2 protein.degradation.ubiquitin.E3.SCF.FBOX
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G17020.3 11Arabidopsis thaliana060497980 (0)M
AT2G17020.2 11Arabidopsis thaliana04821001000 (0)M
AT1G55590.1 11Arabidopsis thaliana2E-8460833520 (0)_
Os03g04270.1 7Oryza sativa062650690 (0)C
Os08g39060.1 7Oryza sativa1E-7859733520 (0)_
Os08g39060.2 7Oryza sativa2E-6138336550 (0)_
v1_GRMZM2G126745_P01 4a53Zea mays062250680 (0)_
GRMZM2G126745_P01 3.21Zea mays062250680 (0)_
Zm00001eb402660_P003 agpv5Zea mays062250680 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: F-box(1) F-box-like(1) F-box_4(1) LRR_4(9) LRR_6(7)
TargetP: Cytoplasm (Class 1 C0.037; M0.075; S0.014; _0.951)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 656 aa (-cTP 583)
Molecular Weight 72.28 kDA(-cTP )
PI 5.20(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1480Detail       leaf [A. thaliana] co-IP GST-ClpSmut stroma clpc1 x clps (rep. 6)
2178Detail       leaf [A. thaliana] stroma Clp GST clp F
2179Detail       leaf [A. thaliana] stroma Clp GST ClpF x ClpS1
2180Detail       leaf [A. thaliana] stroma Clp ClpF

* For details about the exprimental sources click here.

Published Proteomics Data

 19888209(80S polysomal fraction)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help