PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G16510.1   ATPase%2C F0/V0 complex%2C subunit C protein

Lab Annot. vacuolar ATP synthase subunit C
Mapman: 34.1.1 transport.p- and v-ATPases.H+-transporting two-sector ATPase
Curated Location vacuole
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G38920.1 11Arabidopsis thaliana1E-1111641001009 (9)S
AT4G34720.1 11Arabidopsis thaliana1E-1111641001009 (9)S
AT1G19910.1 11Arabidopsis thaliana9E-1111631001006 (6)S
Os02g34510.1 7Oryza sativa4E-10816397994 (4)S
Os05g01560.1 7Oryza sativa9E-10816396990 (0)S
Os12g07140.1 7Oryza sativa2E-10716396984 (4)_
GRMZM5G893252_P01 3.21Zea mays3E-10816397990 (0)S
Zm00001eb267140_P001 agpv5Zea mays3E-10816397990 (0)S
Zm00001eb407840_P001 agpv5Zea mays6E-10816397980 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ATP-synt_C(2)
TargetP: Secreted (Class 2 C0.031; M0.044; S0.865; _0.134)
Predotar:
Subcel. Location:
TM-HMM prediction: 4 TMs
Aramemnon: 3 TMs
TAT position:
Length 164 aa (-cTP 139)
Molecular Weight 16.57 kDA(-cTP )
PI 8.62(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1745Detail        [A. thaliana] Col-0

* For details about the exprimental sources click here.

Published Proteomics Data

15215502(Vacuolar proteome)
15060130(Plasma Membrane proteome)
17151019(vacuole - suspension cell)
17660356(tonoplast (Brassica oleracea buds))
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help