PPDB

The Plant Proteome Database

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AT2G16485.1   GW repeat- and PHD finger-containing protein NERD

Lab Annot. nucleic acid binding;zinc ion binding;DNA binding
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G16485.2 11Arabidopsis thaliana0177399990 (0)_
AT3G51120.1 11Arabidopsis thaliana9E-17660250641 (1)_
AT2G18090.2 11Arabidopsis thaliana3E-8735541600 (0)_
Os09g36090.1 7Oryza sativa01371375018 (18)_
Os10g36810.1 7Oryza sativa070446610 (0)C
Os01g66140.1 7Oryza sativa3E-6358430480 (0)_
Zm00001eb371050_P001 agpv5Zea mays0122439530 (0)_
Zm00001eb371050_P003 agpv5Zea mays0122539530 (0)_
GRMZM2G350447_P01 3.21Zea mays0122439532 (2)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: C5HCH(1) GYF(1) GYF_2(1) Plus-3(1) SWIB(2) zf-B_box(2) zf-CCCH(1) zf-CCCH_2(1) z
TargetP: Cytoplasm (Class 3 C0.337; M0.054; S0.077; _0.770)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1773 aa (-cTP 1740)
Molecular Weight 195.05 kDA(-cTP )
PI 4.69(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help