PPDB

PPDB	The Plant Proteome Database

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AT2G16485.1 GW repeat- and PHD finger-containing protein NERD

Lab Annot.

nucleic acid binding;zinc ion binding;DNA binding
Mapman: 35.2 not assigned.unknown

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G16485.2 11 Arabidopsis thaliana 0 1773 99 99 0 (0) _
AT3G51120.1 11 Arabidopsis thaliana 9E-176 602 50 64 1 (1) _
AT2G18090.2 11 Arabidopsis thaliana 3E-87 355 41 60 0 (0) _
Os09g36090.1 7 Oryza sativa 0 1371 37 50 18 (18) _
Os10g36810.1 7 Oryza sativa 0 704 46 61 0 (0) C
Os01g66140.1 7 Oryza sativa 3E-63 584 30 48 0 (0) _
Zm00001eb371050_P001 agpv5 Zea mays 0 1224 39 53 0 (0) _
Zm00001eb371050_P003 agpv5 Zea mays 0 1225 39 53 0 (0) _
GRMZM2G350447_P01 3.21 Zea mays 0 1224 39 53 2 (2) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	C5HCH(1) GYF(1) GYF_2(1) Plus-3(1) SWIB(2) zf-B_box(2) zf-CCCH(1) zf-CCCH_2(1) z
TargetP:	Cytoplasm (Class 3 C0.337; M0.054; S0.077; _0.770)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1773 aa (-cTP 1740)
Molecular Weight	195.05 kDA(-cTP )
PI	4.69(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data