PPDB

 The Plant Proteome Database

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AT2G14880.1   SWIB/MDM2 domain superfamily protein
Lab Annot. SWIB complex BAF60b domain-containing protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G14880.3 11Arabidopsis thaliana9E-711031001000 (0)C
AT2G14880.2 11Arabidopsis thaliana9E-711031001000 (0)C
AT4G34290.1 11Arabidopsis thaliana9E-64144718074 (45)C
Os03g55310.1 7Oryza sativa7E-3278628318 (18)C
Os12g32280.1 7Oryza sativa9E-3287597731 (31)C
Os02g03730.1 7Oryza sativa2E-2587506811 (11)M
Zm00001eb214330_P001 agpv5Zea mays4E-338759770 (0)C
v1_GRMZM2G077088_P02 4a53Zea mays4E-3387597727 (27)C
GRMZM2G077088_P02 3.21Zea mays4E-3387597731 (31)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: SWIB(1)
TargetP: Chloroplast (Class 1 C0.982; M0.081; S0.009; _0.011)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 141 aa (-cTP 98)
Molecular Weight 15.90 kDA(-cTP 11.23)
PI 9.88(-cTP 8.84)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1334Detail       leaf [A. thaliana] total tissue - low mass region clpt1xclpt2
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1427Detail        [A. thaliana] total leaf tissue 1.11 wild-type
1428Detail        [A. thaliana] total leaf tissue 1.11 Prep1_Prep2_t1_t2
1984Detail       leaf [A. thaliana] plastid wild-type
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2021Detail       leaf [A. thaliana] total leaf tissue  
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2284Detail        [A. thaliana] Clp C1 WT
2285Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 19888209(80S polysomal fraction)
19888209(leaves)
20706207(contaminants cell cycle interactome (cell culture))
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help