PPDB

PPDB	The Plant Proteome Database

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AT2G06990.1 RNA helicase%2C ATP-dependent%2C SK12/DOB1 protein

Lab Annot.

HEN2 (HUA ENHANCER 2); ATP-dependent helicase
Mapman: 27.1 RNA.processing

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G59760.1 11 Arabidopsis thaliana 0 968 48 66 2 (2) _
AT3G46960.3 11 Arabidopsis thaliana 0 1018 35 54 0 (0) _
AT3G46960.2 11 Arabidopsis thaliana 0 1018 35 54 0 (0) _
Os11g07500.1 7 Oryza sativa 0 1003 74 87 10 (10) _
Os11g07500.2 7 Oryza sativa 0 937 73 86 6 (6) _
Os12g18140.1 7 Oryza sativa 0 773 46 65 0 (0) M
v1_GRMZM2G040995_P02 4a53 Zea mays 0 969 49 67 11 (11) _
GRMZM2G040995_P01 3.21 Zea mays 0 973 49 67 1 (1) _
v1_GRMZM2G040995_P01 4a53 Zea mays 0 973 49 67 11 (11) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DEAD(1) DSHCT(1) Helicase_C(2) rRNA_proc-arch(2) TPH(1)
TargetP:	Cytoplasm (Class 5 C0.556; M0.071; S0.038; _0.743)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	995 aa (-cTP 993)
Molecular Weight	111.89 kDA(-cTP )
PI	6.02(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1395	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1424	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 1)
1425	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 2)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
20706207(cell cycle interactome (cell culture))
21693672(wound-regulated leaf proteome (AOS mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data