PPDB

The Plant Proteome Database

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AT2G04520.1   Nucleic acid-binding%2C OB-fold-like protein

Lab Annot. Nucleic acid-binding, OB-fold-like protein
Mapman: 29.2.3 protein.synthesis.initiation
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G35680.3 11Arabidopsis thaliana1E-8612896986 (2)_
AT5G35680.2 11Arabidopsis thaliana5E-8514593967 (3)_
AT5G35680.1 11Arabidopsis thaliana5E-8514593967 (3)_
Os06g23440.1 7Oryza sativa4E-84146839323 (23)_
Os02g19770.1 7Oryza sativa1E-8214585930 (0)_
v1_GRMZM2G349996_P01 4a53Zea mays1E-86145849312 (11)_
Zm00001eb236830_P001 agpv5Zea mays1E-8614584930 (0)_
GRMZM2G349996_P01 3.21Zea mays1E-86145849314 (14)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: eIF-1a(1)
TargetP: Cytoplasm (Class 2 C0.090; M0.153; S0.031; _0.924)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 145 aa (-cTP 131)
Molecular Weight 16.64 kDA(-cTP )
PI 4.83(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1557Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
2219Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep

* For details about the exprimental sources click here.

Published Proteomics Data

19292762(Ubiquitin-affinity seedling (10 d))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help