PPDB

PPDB	The Plant Proteome Database

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AT2G04270.1 RNAse E/G-like protein

Lab Annot.

RNaseE/G-type endoribonuclease
Mapman: 27.1 RNA.processing

Curated Location

plastid stroma (Pubmed: 23198870 18441049 18515828 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G04270.5 11 Arabidopsis thaliana 0 1001 99 99 11 (11) C
AT2G04270.6 11 Arabidopsis thaliana 0 862 100 100 0 (0) M
AT2G04270.2 11 Arabidopsis thaliana 0 862 100 100 20 (20) M
Os08g23430.1 7 Oryza sativa 0 1029 47 64 0 (0) C
Os08g23430.2 7 Oryza sativa 0 874 46 62 0 (0) C
Os08g23430.3 7 Oryza sativa 0 812 43 60 0 (0) C
Zm00001eb038720_P003 agpv5 Zea mays 0 952 48 65 0 (0) C
Zm00001eb038720_P002 agpv5 Zea mays 0 768 55 70 0 (0) _
Zm00001eb038720_P004 agpv5 Zea mays 0 768 55 70 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CBM_20(1) HD-ZIP_N(1) RNase_E_G(1)
TargetP:	Chloroplast (Class 4 C0.686; M0.353; S0.001; _0.090)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	996 aa (-cTP 933)
Molecular Weight	110.90 kDA(-cTP 103.72)
PI	5.59(-cTP 5.36)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
303	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
326	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
542	Detail								leaf [A. thaliana]	stroma (FPLC) >500 kDa (HMB)	wild-type
869	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
870	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
871	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
873	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1393	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1635	Detail								leaf [A. thaliana]	Stroma stroma	clpt1-2
1636	Detail								leaf [A. thaliana]	Stroma stroma	clpt1-2
2249	Detail								seedlings [A. thaliana]	total tissue	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

17293592(total seedlings û light and dark grown)
18431481(chloroplast)

Comparative Proteomics Data