PPDB

 The Plant Proteome Database

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AT2G03870.1   Small nuclear ribonucleoprotein family protein
Lab Annot. small nuclear ribonucleoprotein, putative / snRNP, putative
Mapman: 27.1 RNA.processing
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G03870.2 11Arabidopsis thaliana3E-679910010024 (23)_
AT2G23930.1 11Arabidopsis thaliana3E-127142645 (5)_
AT3G11500.1 11Arabidopsis thaliana2E-117139598 (7)_
Os08g08040.1 7Oryza sativa5E-5693909522 (22)_
Os03g29740.1 7Oryza sativa1E-117139640 (0)_
Os07g41790.2 7Oryza sativa5E-077233545 (5)S
Zm00001eb069280_P001 agpv5Zea mays5E-559883910 (0)_
v1_GRMZM2G106105_P01 4a53Zea mays5E-5598839121 (21)_
GRMZM2G106105_P01 3.21Zea mays5E-5598839121 (21)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF150_C(1) Hfq(1) LSM(1)
TargetP: Cytoplasm (Class 2 C0.134; M0.141; S0.123; _0.824)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 99 aa (-cTP 4)
Molecular Weight 10.77 kDA(-cTP )
PI 5.04(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1357Detail       leaf [A. thaliana] total tissue - low mass region clpt1xclpt2
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2021Detail       leaf [A. thaliana] total leaf tissue  

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data

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