PPDB

 The Plant Proteome Database

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AT2G03390.1   uvrB/uvrC motif-containing protein
Lab Annot. CLPF (adaptor)
Mapman: 29.5.5.30* protein.degradation.serine protease.regulator
Curated Location plastid stroma (Pubmed: 23198870 18431481 26419670 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G03390.4 11Arabidopsis thaliana03301001000 (0)C
AT2G03390.5 11Arabidopsis thaliana02701001000 (0)C
AT2G03390.3 11Arabidopsis thaliana02701001000 (0)C
Os08g07540.1 7Oryza sativa1E-12929761760 (0)_
Os01g55880.1 7Oryza sativa4E-12625868820 (0)M
Os08g07540.2 7Oryza sativa4E-7129745580 (0)_
Zm00001eb370310_P002 agpv5Zea mays7E-13133557700 (0)C
v1_GRMZM2G124321_P01 4a53Zea mays7E-131335577024 (24)C
v1_GRMZM2G124321_P05 4a53Zea mays7E-131335577024 (24)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: HlyD_2(1) UVR(4) YccV-like(1)
TargetP: Chloroplast (Class 1 C0.963; M0.071; S0.023; _0.025)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 330 aa (-cTP 265)
Molecular Weight 37.44 kDA(-cTP 30.12)
PI 5.74(-cTP 4.80)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
187_188Detail       leaf [A. thaliana] chloroplast stromaclpr2-1
303Detail       leaf [A. thaliana] chloroplast stromawild-type
339Detail       leaf [A. thaliana] chloroplast stromawild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
420Detail       leaf [A. thaliana] chloroplast stromaclpR1-stop (EMS)
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
622Detail       leaf [A. thaliana] total leaf tissue wild-type
755Detail        [A. thaliana]  
869Detail       leaf [A. thaliana] chloroplast stromawild-type
870Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1455Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1456Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 2)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1465Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 1)
1467Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 2)
1469Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 3)
1471Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clps (rep. 1-2)
1475Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 4)
1476Detail       leaf [A. thaliana] co-IP GST-ClpSmut stroma clpc1 x clps (rep. 4)
1477Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 5)
1480Detail       leaf [A. thaliana] co-IP GST-ClpSmut stroma clpc1 x clps (rep. 6)
1526Detail       leaf [A. thaliana] co-IP GST-ClpS 100ug bait stromaclpc1 x clps (rep. 2)
1527Detail       leaf [A. thaliana] co-IP GST-ClpS 10ug bait stromaclpc1 x clps (rep. 2)
1688Detail        [A. thaliana] Col-0
1689Detail        [A. thaliana] Col-0
1690Detail        [A. thaliana]  
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2033Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2034Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2057Detail       Total leaf [A. thaliana] chloroplast stromawt and cgep
2065Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2066Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2067Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2068Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2069Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2073Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2077Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2081Detail       Total leaf [A. thaliana] total soluble wt & clpt1xclpt2
2112Detail       leaf [A. thaliana] Stroma stromawt
2120Detail       leaf [A. thaliana] Stroma stromacGep
2121Detail       leaf [A. thaliana] Stroma stromacGep
2144Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2146Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2150Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2172Detail       leaf [A. thaliana] stroma Clp gst against clpF/clpS1 stroma
2173Detail       leaf [A. thaliana] stroma Clp gst clpF against clpF stroma
2174Detail       leaf [A. thaliana] stroma Clp gst clpF against clpFclpS1
2178Detail       leaf [A. thaliana] stroma Clp GST clp F
2179Detail       leaf [A. thaliana] stroma Clp GST ClpF x ClpS1
2180Detail       leaf [A. thaliana] stroma Clp ClpF
2181Detail       leaf [A. thaliana] stroma Clp ClpF x ClpS1
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2217Detail       leaf [A. thaliana] total leaf tissue Clp P5 trap st
2261Detail       leaf [A. thaliana] stroma Clp clp trap
2266Detail       leaf [A. thaliana] stroma Clp Clp C1 wild-type
2267Detail       leaf [A. thaliana] stroma Clp Clp C1 TRAP
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2302Detail        [A. thaliana] Clp C1 WT
2303Detail        [A. thaliana] Clp C1 WT
2305Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP
2316Detail       leaf [A. thaliana] PG plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 18463617(suspension cells-phosphorylated proteins)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
19995723(chloroplast reference proteome)

Comparative Proteomics Data

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