PPDB

 The Plant Proteome Database

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AT2G01860.1   Tetratricopeptide repeat (TPR)-like superfamily protein
Lab Annot. Pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G39230.1 11Arabidopsis thaliana2E-1015425483 (3)M
AT3G54980.1 11Arabidopsis thaliana3E-1021724461 (1)M
AT3G54980.2 11Arabidopsis thaliana3E-1021724460 (0)M
Os02g02590.1 7Oryza sativa1E-12940250690 (0)M
Os03g06710.1 7Oryza sativa8E-1118923440 (0)C
Os03g51840.1 7Oryza sativa3E-1016124520 (0)M
Zm00001eb391890_P001 agpv5Zea mays2E-13541450690 (0)_
Zm00001eb391890_P002 agpv5Zea mays4E-13441450690 (0)C
Zm00001eb391890_P003 agpv5Zea mays4E-13441450690 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: PPR(6) PPR_2(5) PPR_3(4) PPR_long(1)
TargetP: Chloroplast (Class 2 C0.812; M0.123; S0.038; _0.015)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 486 aa (-cTP 426)
Molecular Weight 55.65 kDA(-cTP 48.86)
PI 9.25(-cTP 8.51)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

 19508356(mature pollen grains and pollen tubes)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help