PPDB

PPDB	The Plant Proteome Database

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AT1G80670.1 Transducin/WD40 repeat-like superfamily protein

Lab Annot.

Nucleoporin RAE1
Mapman: 29.3.1 protein.targeting.nucleus

Curated Location

nucleus (Pubmed: 21189294 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G15850.1 11 Arabidopsis thaliana 1E-72 140 77 85 0 (0) C
AT3G19590.1 11 Arabidopsis thaliana 1E-64 341 35 56 3 (0) C
AT1G49910.1 11 Arabidopsis thaliana 4E-63 341 35 55 2 (2) _
Os08g07960.2 7 Oryza sativa 0 350 80 88 0 (0) C
Os08g07960.1 7 Oryza sativa 0 350 80 88 0 (0) C
Os01g44394.1 7 Oryza sativa 0 328 77 85 0 (0) C
Zm00001eb412490_P001 agpv5 Zea mays 0 341 80 90 0 (0) C
GRMZM2G058498_P01 3.21 Zea mays 0 341 80 90 2 (2) C
Zm00001eb158970_P001 agpv5 Zea mays 0 346 75 85 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ANAPC4_WD40(5) Nup160(2) WD40(5)
TargetP:	Chloroplast (Class 2 C0.890; M0.055; S0.016; _0.242)
Predotar:
Subcel. Location:	Lumen
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	349 aa (-cTP 313) (-lTP 228)
Molecular Weight	38.27 kDA(-cTP 34.58)(-lTP 25.68)
PI	8.65(-cTP 8.67)(-lTP 9.113)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
19334764(plasma membrane (cell culture))
19888209(leaves)
20706207(contaminants cell cycle interactome (cell culture))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data