PPDB

The Plant Proteome Database

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AT1G80240.1   choice-of-anchor C domain protein%2C putative (Protein of unknown function%2C DUF642)

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
TAIR curated location: cell wall (sensu Magnoliophyta)16287169
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G25460.1 11Arabidopsis thaliana7E-1723586478131 (80)S
AT5G11420.1 11Arabidopsis thaliana2E-1703606377175 (107)S
AT4G32460.1 11Arabidopsis thaliana1E-16435663768 (7)S
Os01g42520.1 7Oryza sativa3E-15834263760 (0)S
Os02g11040.1 7Oryza sativa3E-14636456730 (0)S
Os04g41710.1 7Oryza sativa4E-14537057700 (0)S
Zm00001eb235330_P001 agpv5Zea mays1E-14733259750 (0)S
v1_GRMZM2G012904_P01 4a53Zea mays1E-14733259750 (0)S
GRMZM2G012904_P01 3.21Zea mays1E-14733259750 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF642(2)
TargetP: Secreted (Class 1 C0.016; M0.011; S0.951; _0.062)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 370 aa (-cTP 282)
Molecular Weight 40.23 kDA(-cTP )
PI 8.53(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
1717Detail        [A. thaliana]  
2249Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

18796151(cell wall (hypocotyl))
19714877(interactomes 14-3-3 complexes (cell culture))
WallDB-E.Jamet(cell wall reference proteome)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help