PPDB

PPDB	The Plant Proteome Database

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AT1G80170.1 Pectin lyase-like superfamily protein

Lab Annot.

Pectin lyase-like
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G80170.2 11 Arabidopsis thaliana 0 311 100 100 0 (0) S
AT1G23460.2 11 Arabidopsis thaliana 9E-122 398 45 64 0 (0) _
AT1G23460.1 11 Arabidopsis thaliana 1E-121 398 45 64 0 (0) S
Os05g46510.1 7 Oryza sativa 1E-131 376 47 67 0 (0) S
Os07g10740.1 7 Oryza sativa 7E-124 406 45 61 0 (0) S
Os07g10680.1 7 Oryza sativa 9E-118 365 49 64 0 (0) S
GRMZM2G079263_P03 3.21 Zea mays 3E-133 377 47 67 0 (0) S
Zm00001eb294520_P002 agpv5 Zea mays 3E-133 377 47 67 0 (0) S
v1_GRMZM2G079263_P03 4a53 Zea mays 3E-133 377 47 67 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(2) Glyco_hydro_28(1) NosD(2) Pectate_lyase_3(3)
TargetP:	Secreted (Class 1 C0.010; M0.072; S0.890; _0.005)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	444 aa (-cTP 405)
Molecular Weight	48.17 kDA(-cTP )
PI	8.67(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

17526915(glycoproteome cell wall (stems))
WallDB-E.Jamet(cell wall reference proteome)
22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data