PPDB

 The Plant Proteome Database

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AT1G79990.1   coatomer subunit beta-2
Lab Annot. coatomer protein complex, subunit beta 2 (beta prime)
Mapman: 31.4 cell.vesicle transport
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G79990.3 10Arabidopsis thaliana092010010061 (35)M
AT1G79990.2 11Arabidopsis thaliana092099991 (1)M
AT1G79990.5 10Arabidopsis thaliana0920999961 (35)M
Os06g05180.2 6Oryza sativa0917829134 (34)M
Os06g05180.1 6Oryza sativa0914829134 (34)M
Os02g11830.2 7Oryza sativa0923789048 (48)M
Zm00001eb240380_P006 agpv5Zea mays092380910 (0)M
v1_GRMZM2G124886_P03 4a53Zea mays0923809128 (27)M
GRMZM2G124886_P02 3.21Zea mays0923809158 (32)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ANAPC4_WD40(5) Coatomer_WDAD(2) Nup160(4) TPR_2(1) TPR_8(2) WD40(8) WD40_like(3)
TargetP: Mitochondria (Class 4 C0.080; M0.673; S0.022; _0.448)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 920 aa (-cTP 889)
Molecular Weight 103.97 kDA(-cTP )
PI 4.87(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
1197Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1424Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 1)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1445Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 1)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1449Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 2)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2216Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2250Detail       seedlings [A. thaliana] total tissue atg5
2253Detail       seedlings [A. thaliana] total tissue atg5
2256Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9
2268Detail       seedlings [A. thaliana] total tissue wild-type
2271Detail       seedlings [A. thaliana] total tissue wild-type
2272Detail       seedlings [A. thaliana] total tissue wild-type
2286Detail        [A. thaliana] Clp C1 WT
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2302Detail        [A. thaliana] Clp C1 WT
2307Detail        [A. thaliana] Clp C1 TRAP
2312Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2313Detail       leaf [A. thaliana] thylakoids thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19114538(guard cells Arabidopsis leaf)
22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help