PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G79940.1   DnaJ / Sec63 Brl domains-containing protein
Lab Annot. J-domain protein DjC20 (type 3)
Mapman: 26.29* misc. DnaJ domain with unknown function
Curated Location
TAIR curated location: mitochondrion14671022
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G79940.2 11Arabidopsis thaliana068710010017 (15)S
AT1G79940.3 11Arabidopsis thaliana068710010017 (15)S
AT1G79940.4 11Arabidopsis thaliana0585969717 (15)S
Os04g24180.1 7Oryza sativa068670857 (7)S
Os04g24180.2 7Oryza sativa068670857 (7)S
Os02g01740.1 7Oryza sativa1E-20394244331 (31)M
Zm00001eb086520_P004 agpv5Zea mays037575890 (0)S
GRMZM2G167868_P01 3.21Zea mays034576910 (0)S
v1_GRMZM2G167868_P01 4a53Zea mays034576911 (1)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CDC45(1) DnaJ(1) DUF4666(1) DUF996(2) PBP1_TM(1) Sec63(1)
TargetP: Secreted (Class 4 C0.009; M0.013; S0.696; _0.377)
Predotar:
Subcel. Location:
TM-HMM prediction: 3 TMs
Aramemnon: 2 TMs
TAT position:
Length 687 aa (-cTP 655)
Molecular Weight 76.90 kDA(-cTP )
PI 5.28(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1699Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek5-1
1712Detail       Rosettes [A. thaliana] Thylakoids thylakoid membraneWild-type
1714Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek1k3
1716Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek5-1
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
2245Detail       seedlings [A. thaliana] total tissue wild-type
2255Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

 MitoDB(Mitochondrial proteome)
16618929(ER-LOPIT-callus)
17317660(Plasma Membrane proteome)
18463617(suspension cells-phosphorylated proteins)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21166475(cytosolic-fractions-crude)
21173025(root proteome)
22430844(Golgi-cell-culture)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help