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AT1G79850.1 ribosomal protein S17

Lab Annot.

30S ribosomal protein S17
Mapman: 29.2.1.1.1.1.17 protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S17

Curated Location

plastid ribosome (Pubmed: 23198870 18431481 ) (supported by in-house exprements)

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G49400.1 11 Arabidopsis thaliana 2E-09 78 38 56 0 (0) _
AT3G18880.2 11 Arabidopsis thaliana 4E-09 78 37 55 0 (0) _
AT3G18880.1 11 Arabidopsis thaliana 4E-09 78 37 55 0 (0) _
Os04g59494.1 7 Oryza sativa 1E-33 84 71 82 65 (65) _
Os08g27090.1 7 Oryza sativa 4E-10 78 41 55 0 (0) _
Zm00001eb367450_P001 agpv5 Zea mays 3E-36 84 70 80 0 (0) C
GRMZM2G038013_P01 3.21 Zea mays 1E-32 84 65 78 33 (33) C
Zm00001eb434460_P001 agpv5 Zea mays 1E-32 84 65 78 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Ribosomal_S17(1)
TargetP:	Chloroplast (Class 1 C0.957; M0.028; S0.039; _0.037)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	149 aa (-cTP 101)
Molecular Weight	16.28 kDA(-cTP 11.20)
PI	10.57(-cTP 10.24)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
151	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
180_181	Detail								leaf [A. thaliana]	chloroplast stroma	clpr2-1
272	Detail								leaf [A. thaliana]	chloroplast stroma	clpr2-1
303	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
310	Detail								leaf [A. thaliana]	total leaf tissue	clpr2-1:R2-TAPlong
326	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
339	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
342	Detail								leaf [A. thaliana]	chloroplast low density membrane	wild-type
343	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
351	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
352	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
371	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
395	Detail								leaf [A. thaliana]	total leaf tissue	ffc1-2
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
528	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt2)
542	Detail								leaf [A. thaliana]	stroma (FPLC) >500 kDa (HMB)	wild-type
543	Detail								leaf [A. thaliana]	stroma (FPLC) >600 kDa (HMA)	wild-type
640	Detail								leaf [A. thaliana]	plastid nucleoid	wild-type
869	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
870	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
873	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
874	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
876	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
877	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1175	Detail								leaf [A. thaliana]	co-IP RH3 stroma	wild-type
1178	Detail								leaf [A. thaliana]	co-IP RH3 stroma	clpr2-1
1179	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	clpr2-1
1196	Detail								leaf [A. thaliana]	co-IP RH3 stroma	clpr2-1
1215	Detail								leaf [A. thaliana]	co-IP ClpR2 stroma	wild-type
1292	Detail								leaf [A. thaliana]	co-IP cGEP (rep. 1) stroma	wild-type
1331	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
1332	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	shoot1
1347	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 3)
1350	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 3)
1353	Detail								leaf [A. thaliana]	total tissue	Prep1_Prep2_t1
1392	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1393	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1394	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1395	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1396	Detail								leaf [A. thaliana]	total leaf tissue	clpt1xclpt2 (rep. 2)
1397	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 3)
1398	Detail								leaf [A. thaliana]	total leaf tissue 1.14	Prep1_Prep2
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1400	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1402	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1403	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1404	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1405	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1406	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1408	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1409	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	wild-type
1410	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.2	wild-type
1411	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	clpr2-1
1412	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.2	clpr2-1
1413	Detail								leaf [A. thaliana]	total leaf tissue -114 rep1tR1	wild-type
1414	Detail								leaf [A. thaliana]	total leaf tissue -114 rep1tR2	wild-type
1415	Detail								leaf [A. thaliana]	total leaf tissue 1.14 rep 1.1	clpr2-1
1416	Detail								leaf [A. thaliana]	total leaf tissue 1.14 rep 1.2	clpr2-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1420	Detail								[A. thaliana]
1424	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 1)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1427	Detail								[A. thaliana]	total leaf tissue 1.11	wild-type
1428	Detail								[A. thaliana]	total leaf tissue 1.11	Prep1_Prep2_t1_t2
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1432	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1443	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 2)
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1459	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 2)
1460	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 3)
1461	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 1)
1465	Detail								leaf [A. thaliana]	co-IP GST-ClpS stroma	clpc1 x clps (rep. 1)
1481	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 1)
1482	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 1)
1484	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 2)
1485	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 3)
1486	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 3)
1507	Detail								[A. thaliana]		wild-type
1508	Detail								[A. thaliana]
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1526	Detail								leaf [A. thaliana]	co-IP GST-ClpS 100ug bait stroma	clpc1 x clps (rep. 2)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1529	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	wild-type (rep. 1)
1531	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	wild-type (rep. 1)
1532	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	clps (rep. 1)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1538	Detail								leaf [A. thaliana]	plastid RNCs thylakoid membrane	wild-type
1539	Detail								leaf [A. thaliana]		wild-type
1566	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k2k3
1567	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k2k3
1568	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	WT
1572	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	WT
1574	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k2k3
1582	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	K2K3
1596	Detail								[A. thaliana]
1633	Detail								leaf [A. thaliana]	Stroma stroma	wild-type
1634	Detail								leaf [A. thaliana]	Stroma stroma	wild-type
1635	Detail								leaf [A. thaliana]	Stroma stroma	clpt1-2
1636	Detail								leaf [A. thaliana]	Stroma stroma	clpt1-2
1637	Detail								leaf [A. thaliana]	total leaf tissue stroma	Wild-type
1638	Detail								leaf [A. thaliana]	total leaf tissue stroma	Wild-type
1639	Detail								leaf [A. thaliana]	total leaf tissue stroma	clpt2-1
1640	Detail								leaf [A. thaliana]	total leaf tissue stroma	clpt2-1
1641	Detail								leaf [A. thaliana]	total tissue	shoot1 mutant
1643	Detail								leaf [A. thaliana]	total leaf tissue	Wild-type
1664	Detail								[A. thaliana]
1666	Detail								[A. thaliana]
1670	Detail								[A. thaliana]
1672	Detail								[A. thaliana]
1676	Detail								Rosettes [A. thaliana]
1690	Detail								[A. thaliana]
1707	Detail								[A. thaliana]		sht1
1709	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	Wild-type
1712	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	Wild-type
1714	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	k1k3
1870	Detail								Total leaf [A. thaliana]	Stroma	wild-type
1873	Detail								Total leaf [A. thaliana]	Stroma	wild-type
1875	Detail								Total leaf [A. thaliana]	total soluble	wild-type
1930	Detail								leaf [A. thaliana]	total leaf tissue	Col_0 Wild-type
1932	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag
1933	Detail								leaf [A. thaliana]	chloroplast	wild-type
1936	Detail								leaf [A. thaliana]	chloroplast	Prep1_Prep2
1937	Detail								leaf [A. thaliana]	chloroplast	Prep1_Prep2
1938	Detail								leaf [A. thaliana]	chloroplast	Prep1_Prep2
1941	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1942	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1943	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1944	Detail								leaf [A. thaliana]	stroma UVR stroma	UVR
1945	Detail								leaf [A. thaliana]	stroma UVR stroma	UVR
1946	Detail								leaf [A. thaliana]	stroma UVR stroma	wild-type
1947	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1948	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1949	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1983	Detail								leaf [A. thaliana]	plastid	wild-type
1984	Detail								leaf [A. thaliana]	plastid	wild-type
1985	Detail								leaf [A. thaliana]	plastid	wild-type
1986	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2
1987	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2
1988	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2
1999	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2000	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2001	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2002	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2009	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2010	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2015	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2017	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2018	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2019	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2020	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2021	Detail								leaf [A. thaliana]	total leaf tissue
2112	Detail								leaf [A. thaliana]	Stroma stroma	wt
2113	Detail								leaf [A. thaliana]	Stroma stroma	wt
2115	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2117	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2120	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2121	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2122	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2123	Detail								leaf [A. thaliana]	Stroma stroma	Wild typre
2124	Detail								leaf [A. thaliana]	Stroma stroma	wild type
2125	Detail								leaf [A. thaliana]	Stroma stroma	wild type
2126	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2127	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2129	Detail								leaf [A. thaliana]	Stroma stroma	wild-type
2130	Detail								leaf [A. thaliana]	Stroma stroma	wild-type
2131	Detail								leaf [A. thaliana]	Stroma stroma	wild-type
2160	Detail								leaf [A. thaliana]	stroma Clp stroma	P3-strepII 13
2165	Detail								leaf [A. thaliana]	stroma Clp stroma	P3-trap-strepII
2183	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2185	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2190	Detail								[A. thaliana]	plastid stroma stroma	P3-strepII 31
2191	Detail								[A. thaliana]	plastid stroma stroma	P3-trap-strepII 40
2192	Detail								[A. thaliana]	total soluble	P3-trap-strepII 16
2209	Detail								leaf [A. thaliana]	total leaf tissue	Clp P5 Trapst 10
2211	Detail								leaf [A. thaliana]	total leaf tissue	Clp P5 Trapst 12
2217	Detail								leaf [A. thaliana]	total leaf tissue	Clp P5 trap st
2218	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2223	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2225	Detail								leaf [A. thaliana]	total leaf tissue	Clp P3 trap
2226	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2237	Detail								seedlings [A. thaliana]	total tissue	gfs9
2239	Detail								seedlings [A. thaliana]	total tissue	gfs9
2240	Detail								seedlings [A. thaliana]	total tissue	gfs9
2246	Detail								seedlings [A. thaliana]	total tissue	gfs9
2247	Detail								seedlings [A. thaliana]	total tissue	atg5
2248	Detail								seedlings [A. thaliana]	total tissue	wild-type
2249	Detail								seedlings [A. thaliana]	total tissue	gfs9
2251	Detail								seedlings [A. thaliana]	total tissue	wild-type
2252	Detail								seedlings [A. thaliana]	total tissue	gfs9
2253	Detail								seedlings [A. thaliana]	total tissue	atg5
2262	Detail								leaf [A. thaliana]	stroma Clp	Clp C1 wild-type
2263	Detail								leaf [A. thaliana]	stroma Clp	Clp C1 trap
2266	Detail								leaf [A. thaliana]	stroma Clp	Clp C1 wild-type
2267	Detail								leaf [A. thaliana]	stroma Clp	Clp C1 TRAP
2284	Detail								[A. thaliana]		Clp C1 WT
2285	Detail								[A. thaliana]		Clp C1 TRAP
2286	Detail								[A. thaliana]		Clp C1 WT
2287	Detail								[A. thaliana]		Clp C1 WT
2289	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT
2298	Detail								[A. thaliana]		Clp C1 WT
2299	Detail								[A. thaliana]		Clp C1 TRAP
2300	Detail								[A. thaliana]		Clp C1 TRAP
2302	Detail								[A. thaliana]		Clp C1 WT
2303	Detail								[A. thaliana]		Clp C1 WT
2304	Detail								[A. thaliana]		Clp C1 WT
2305	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP
2321	Detail								leaf [A. thaliana]
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
12938931(Total chloroplast envelope)
16207701(chloroplast stroma)
18633119(young leaf)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
20423899(chloroplast)
19888209(80S polysomal fraction)
19888209(leaves)
19376835(leaf phosphoproteins)
19423572(leaf (wt and clpr2-1))
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
22060019(phosphoproteome - N-starved seedlings)
21768351(Leaf-Phosphoproteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data