PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G79750.1   NADP-malic enzyme 4
Lab Annot. NADP-malic enzyme 4 (NADP-ME4)
Mapman: 8.2.10 TCA / org.transformation.other organic acid transformations.malic
Curated Location plastid (Pubmed: 23198870 16113210 )

TAIR curated location: chloroplast16113210
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G25880.1 11Arabidopsis thaliana057177898 (3)_
AT5G11670.1 11Arabidopsis thaliana05727789717 (425)_
AT2G19900.1 11Arabidopsis thaliana0572779117 (14)_
Os01g52500.2 7Oryza sativa0576799114 (14)M
Os01g52500.3 7Oryza sativa0576799114 (14)_
Os01g09320.1 7Oryza sativa0595778913 (13)C
v1_GRMZM2G159724_P01 4a53Zea mays0576799124 (24)_
GRMZM2G159724_P01 3.21Zea mays0576799123 (15)_
v1_GRMZM2G159724_P03 4a53Zea mays0576799128 (28)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: malic(1) Malic_M(1)
TargetP: Chloroplast (Class 2 C0.903; M0.245; S0.012; _0.009)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 646 aa (-cTP 572)
Molecular Weight 71.16 kDA(-cTP 63.46)
PI 6.14(-cTP 6.06)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
102Detail       petal [B. oleracea] plastid stromaAlboglabra
1202Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1207Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1208Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1520Detail       leaf [A. thaliana] wild-type
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1826Detail       leaf tip mesophyll [Zea Mays] chloroplast stromaW22 (repl. 3)
2003Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2005Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2007Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2028Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48

* For details about the exprimental sources click here.

Published Proteomics Data

 19200160(flower-stage 12)
19546170(mature pollen grains)
17216043(leaf)
19334764(plasma membrane (cell culture))
20018591(Co2+ binding (mitochondria - cell culture))
20018591(Zn2+ binding (mitochondria - cell culture))
21311031(mitochondria)
21693672(wound-regulated leaf proteome (wt))
21841088(mitochondria (2DE native gel))
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help