PPDB

PPDB	The Plant Proteome Database

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AT1G79590.1 syntaxin of plants 52

Lab Annot.

SYP52 (SYNTAXIN OF PLANTS 52)
Mapman: 31.4 cell.vesicle transport

Curated Location

TAIR curated location: endosome membrane11115874

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G79590.2 11 Arabidopsis thaliana 1E-171 233 100 100 1 (1) _
AT1G79590.3 11 Arabidopsis thaliana 7E-171 233 100 100 0 (0) S
AT1G16240.2 11 Arabidopsis thaliana 5E-140 233 81 93 4 (4) _
Os08g17600.2 7 Oryza sativa 5E-108 233 63 83 4 (4) _
Os08g17600.1 7 Oryza sativa 5E-108 233 63 83 4 (4) _
Os02g02720.3 7 Oryza sativa 2E-106 233 62 83 10 (10) _
Zm00001eb177630_P001 agpv5 Zea mays 1E-108 233 64 84 0 (0) _
Zm00001eb177630_P003 agpv5 Zea mays 1E-108 233 64 84 0 (0) _
v1_GRMZM2G115775_P04 4a53 Zea mays 1E-108 233 64 84 9 (8) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF16(2) DUF745(2) Sarcoglycan_1(2) SlyX(2) SNARE(1) Syntaxin-6_N(2)
TargetP:	Cytoplasm (Class 3 C0.254; M0.065; S0.015; _0.793)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	233 aa (-cTP 191)
Molecular Weight	26.11 kDA(-cTP )
PI	8.52(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

15539469(vacuole)
19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)
21988472(vacuole (unfiltered data))
21515685(GreenCut2)

Comparative Proteomics Data