PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G79560.1   FTSH protease 12
Lab Annot. FtsH12
Mapman: 29.5.7.2.4* protein.degradation.metalloprotease.MA(M).M41
Curated Location envelope (Pubmed: 23198870 14630971 )

TAIR curated location: chloroplast14630971
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G79560.2 11Arabidopsis thaliana09831001000 (0)C
AT1G79560.3 11Arabidopsis thaliana09561001000 (0)C
AT1G50250.1 11Arabidopsis thaliana8E-794923454549 (509)C
Os06g51029.1 7Oryza sativa6E-816223150128 (128)C
Os06g51029.2 7Oryza sativa3E-79547345263 (63)C
Os06g45820.2 7Oryza sativa2E-66470335239 (39)C
GRMZM2G126361_P01 3.21Zea mays2E-826223250413 (325)C
GRMZM2G126361_P02 3.21Zea mays2E-826223250413 (325)C
v1_GRMZM2G126361_P01 4a53Zea mays2E-826223250307 (307)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AAA(1) AAA_14(1) AAA_16(1) AAA_17(1) AAA_18(1) AAA_2(1) AAA_22(1) AAA_24(1) AAA_
TargetP: Chloroplast (Class 2 C0.810; M0.123; S0.005; _0.209)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 2 TMs
Aramemnon: 2 TMs
TAT position:
Length 1008 aa (-cTP 959)
Molecular Weight 115.10 kDA(-cTP 109.53)
PI 6.49(-cTP 5.88)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1424Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 1)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1535Detail       leaf [A. thaliana] wild-type
1708Detail        [A. thaliana] Wild-type
1749Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1757Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1758Detail       leaf [A. thaliana] total leaf tissue DXS_Flag+fosmidomycin
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
1832Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1930Detail       leaf [A. thaliana] total leaf tissue Col_0 Wild-type
1931Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1932Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1934Detail       leaf [A. thaliana] chloroplast wild-type
1936Detail       leaf [A. thaliana] chloroplast Prep1_Prep2
1983Detail       leaf [A. thaliana] plastid wild-type
1984Detail       leaf [A. thaliana] plastid wild-type
1985Detail       leaf [A. thaliana] plastid wild-type
1986Detail       leaf [A. thaliana] plastid Prep1_Prep2
1987Detail       leaf [A. thaliana] plastid Prep1_Prep2
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 16618929(MITO/PLASTID-LOPIT-callus)
18431481(chloroplast)
19995728(proplastid (Brassica napus))
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21433285(Crude microsomes cell_cultures)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help