PPDB

 The Plant Proteome Database

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AT1G79530.1   glyceraldehyde-3-phosphate dehydrogenase of plastid 1
Lab Annot. glyceraldehyde-3-phosphate dehydrogenase-Cp-1 (GapCp-1)
Mapman: 4.9 glycolysis.glyceraldehyde 3-phosphate dehydrogenase
Curated Location plastid stroma (Pubmed: 23198870 19675149 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G16300.1 11Arabidopsis thaliana0422869120 (14)C
AT3G04120.1 11Arabidopsis thaliana033273841513 (988)_
AT1G13440.1 11Arabidopsis thaliana033273841674 (1126)_
Os02g07490.1 7Oryza sativa0362859222 (22)C
Os06g45590.1 7Oryza sativa037284910 (0)C
Os08g03290.1 7Oryza sativa0333738372 (72)_
Zm00001eb233140_P001 agpv5Zea mays036285920 (0)C
GRMZM2G104632_P01 3.21Zea mays03628592112 (42)C
Zm00001eb207270_P002 agpv5Zea mays036184910 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: 2-Hacid_dh_C(1) ADH_zinc_N(1) DapB_N(1) Gp_dh_C(1) Gp_dh_N(1)
TargetP: Chloroplast (Class 1 C0.914; M0.066; S0.002; _0.018)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 422 aa (-cTP 346)
Molecular Weight 44.83 kDA(-cTP 36.89)
PI 8.75(-cTP 6.79)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
94Detail       root [B. rapa] plastid stroma 
324Detail       leaf [A. thaliana] cell wall enriched wild-type
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2269Detail       seedlings [A. thaliana] total tissue wild-type
2271Detail       seedlings [A. thaliana] total tissue wild-type
2273Detail       seedlings [A. thaliana] total tissue wild-type
2275Detail       seedlings [A. thaliana] total tissue wild-type
2291Detail        [A. thaliana] Clp C1 TRAP
2302Detail        [A. thaliana] Clp C1 WT
2304Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 17432890(leaf total membranes)
19995728(proplastid (Brassica napus))
18931141(peroxisomes- high&low purity (cell culture))
18931141(peroxisomes-high purity (cell culture))
19546170(mature pollen grains)
19253305(phosphoproteins (etiolated seedling))
20018591(strong Cu2+ binding (mitochondria - cell culture))
20018591(Zn2+ binding (mitochondria - cell culture))
20706207(cell cycle interactome (cell culture))
19114538(guard cells Arabidopsis leaf)
19508356(mature pollen grains and pollen tubes)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help