PPDB

 The Plant Proteome Database

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AT1G79080.1   Pentatricopeptide repeat (PPR) superfamily protein
Lab Annot. Pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location plastid (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G09900.1 11Arabidopsis thaliana2E-10548335602 (2)_
AT3G04760.1 11Arabidopsis thaliana6E-96491355434 (33)C
AT3G04760.2 11Arabidopsis thaliana3E-8447133540 (0)C
Os02g35750.1 7Oryza sativa3E-9147235550 (0)C
Os02g35750.2 7Oryza sativa3E-9147235550 (0)C
Os01g57410.2 7Oryza sativa6E-7547131520 (0)C
v1_GRMZM2G127963_P01 4a53Zea mays8E-8948535558 (8)C
Zm00001eb244420_P001 agpv5Zea mays8E-8948535550 (0)C
GRMZM2G127963_P01 3.21Zea mays8E-8948535559 (9)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Antimicrobial_6(3) Clathrin(3) Coatomer_E(2) MRP-S27(4) PPR(13) PPR_1(13) PPR_2(
TargetP: Chloroplast (Class 1 C0.918; M0.050; S0.025; _0.089)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 576 aa (-cTP 539)
Molecular Weight 64.01 kDA(-cTP 60.12)
PI 6.12(-cTP 5.92)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1635Detail       leaf [A. thaliana] Stroma stromaclpt1-2
1636Detail       leaf [A. thaliana] Stroma stromaclpt1-2

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help