PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G79050.1   recA DNA recombination family protein
Lab Annot. DNA repair protein recA
Mapman: 28.2 DNA.repair
Curated Location plastid stroma (Pubmed: 23198870 17468263 20406785 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G79050.2 11Arabidopsis thaliana0337999958 (19)C
AT2G19490.1 11Arabidopsis thaliana2E-9132549702 (1)M
AT3G10140.1 11Arabidopsis thaliana1E-5533438600 (0)M
Os03g43850.1 7Oryza sativa036983900 (0)C
Os01g67510.1 7Oryza sativa9E-8736045660 (0)M
Os11g19720.1 7Oryza sativa1E-7835842630 (0)M
GRMZM2G016602_P04 3.21Zea mays0382788665 (10)C
Zm00001eb050740_P001 agpv5Zea mays038278860 (0)C
GRMZM2G016602_P03 3.21Zea mays0364829065 (10)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AAA_24(1) AAA_25(1) AAA_35(1) ABC_tran(1) ATPase(2) ATPase_2(1) PAXNEB(1) Rad51(
TargetP: Chloroplast (Class 2 C0.841; M0.057; S0.024; _0.123)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 439 aa (-cTP 388)
Molecular Weight 47.73 kDA(-cTP 41.99)
PI 6.00(-cTP 5.60)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
541Detail       leaf [A. thaliana] stroma (FPLC) >1 MDa stromawild-type
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
1175Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1637Detail       leaf [A. thaliana] total leaf tissue stromaWild-type
1638Detail       leaf [A. thaliana] total leaf tissue stromaWild-type
1639Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1640Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
2269Detail       seedlings [A. thaliana] total tissue wild-type
2273Detail       seedlings [A. thaliana] total tissue wild-type
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 19334764(plasma membrane (cell culture))
20423899(chloroplast)
19995723(chloroplast reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help