PPDB

 The Plant Proteome Database

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AT1G78860.1   D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein
Lab Annot. curculin-like (mannose-binding) lectin protein, low similarity to Ser/Thr protein kinase
Mapman: 26.16 misc.myrosinases-lectin-jacalin
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G78850.1 11Arabidopsis thaliana04419396226 (123)S
AT1G16905.1 11Arabidopsis thaliana2E-13141846650 (0)S
AT1G78830.1 11Arabidopsis thaliana2E-1184614460178 (98)S
Os02g13965.1 7Oryza sativa9E-3637532490 (0)S
Os04g23720.1 7Oryza sativa4E-3237429440 (0)_
Os04g23760.1 7Oryza sativa5E-2937529450 (0)_
v1_GRMZM2G383881_P01 4a53Zea mays5E-3739131470 (0)M
Zm00001eb239040_P001 agpv5Zea mays5E-3739131470 (0)M
GRMZM2G383881_P01 3.21Zea mays5E-3739131470 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: B_lectin(2) PAN_2(1) PAN_4(2) S_locus_glycop(3)
TargetP: Secreted (Class 1 C0.005; M0.024; S0.981; _0.159)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 443 aa (-cTP 392)
Molecular Weight 49.19 kDA(-cTP )
PI 5.93(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
355Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
356Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1413Detail       leaf [A. thaliana] total leaf tissue -114 rep1tR1 wild-type
1414Detail       leaf [A. thaliana] total leaf tissue -114 rep1tR2 wild-type
1415Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.1 clpr2-1
1416Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.2 clpr2-1
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2287Detail        [A. thaliana] Clp C1 WT
2289Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2303Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

 15593128(Cell Wall proteome)
17526915(glycoproteome cell wall (stems))
18436743(specific to roots)
18796151(cell wall (hypocotyl))
WallDB-E.Jamet(cell wall reference proteome)
21173025(root proteome)
21109274(cellwall-glycoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help