PPDB

The Plant Proteome Database

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AT1G78815.1   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)

Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G16910.1 11Arabidopsis thaliana2E-8016371760 (0)_
AT2G42610.2 11Arabidopsis thaliana2E-71164647497 (33)_
AT2G42610.1 11Arabidopsis thaliana2E-71164647497 (33)_
Os01g61310.1 7Oryza sativa8E-6513369850 (0)C
Os05g28040.1 7Oryza sativa2E-6213267840 (0)_
Os05g39500.1 7Oryza sativa7E-6213365840 (0)_
GRMZM2G135332_P01 3.21Zea mays2E-6913767820 (0)_
v1_GRMZM2G135332_P01 4a53Zea mays2E-6913767820 (0)_
Zm00001eb368530_P001 agpv5Zea mays2E-6913767820 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF640(1)
TargetP: Chloroplast (Class 3 C0.899; M0.022; S0.035; _0.366)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 195 aa (-cTP 143)
Molecular Weight 21.62 kDA(-cTP 15.84)
PI 9.85(-cTP 9.71)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help