PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G78420.1 RING/U-box superfamily protein

Lab Annot.

Mapman: 35.2 not assigned.unknown

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G78420.2 11 Arabidopsis thaliana 0 401 100 100 0 (0) _
AT1G17145.1 11 Arabidopsis thaliana 6E-121 363 57 70 2 (2) _
AT1G17145.2 11 Arabidopsis thaliana 1E-109 246 68 81 0 (0) _
Os02g14720.1 7 Oryza sativa 5E-98 434 44 59 0 (0) _
Os02g14720.2 7 Oryza sativa 1E-95 434 44 59 0 (0) _
Os06g06120.1 7 Oryza sativa 7E-94 432 41 59 0 (0) M
Zm00001eb238650_P001 agpv5 Zea mays 2E-100 440 45 57 0 (0) _
Zm00001eb238650_P002 agpv5 Zea mays 1E-98 441 45 56 0 (0) _
GRMZM2G007288_P01 3.21 Zea mays 1E-98 441 45 56 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	NeA_P2(1) zf-C3HC4(1) zf-C3HC4_2(1) zf-C3HC4_3(1) zf-RING_5(1)
TargetP:	Cytoplasm (Class 4 C0.009; M0.590; S0.040; _0.886)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	401 aa (-cTP 389)
Molecular Weight	45.05 kDA(-cTP )
PI	5.22(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data