PPDB

 The Plant Proteome Database

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AT1G78400.1   Pectin lyase-like superfamily protein
Lab Annot. Pectin lyase-like
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G33160.1 11Arabidopsis thaliana5E-17339761760 (0)S
AT1G17150.1 11Arabidopsis thaliana3E-17139759730 (0)S
AT1G43080.1 11Arabidopsis thaliana3E-16440757710 (0)S
Os02g10300.1 7Oryza sativa6E-10235742590 (0)S
Os08g23790.1 7Oryza sativa6E-10138843620 (0)S
Os06g35320.1 7Oryza sativa1E-10036742590 (0)S
GRMZM2G030265_P01 3.21Zea mays4E-10436942611 (1)S
v1_GRMZM2G030265_P01 4a53Zea mays4E-10436942610 (0)S
Zm00001eb205940_P001 agpv5Zea mays1E-10336942610 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Glyco_hydro_28(1) Pectate_lyase_3(4)
TargetP: Secreted (Class 1 C0.063; M0.012; S0.993; _0.010)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 404 aa (-cTP 322)
Molecular Weight 44.12 kDA(-cTP )
PI 9.72(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 22060019(phosphoproteome - N-starved seedlings)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help