PPDB

PPDB	The Plant Proteome Database

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AT1G77800.1 PHD finger family protein

Lab Annot.

PHD finger protein
Mapman: 27.3.67 RNA.regulation of transcription.putative transcription regulator

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G77800.2 11 Arabidopsis thaliana 0 1375 99 99 1 (1) _
AT1G77800.7 11 Arabidopsis thaliana 0 1307 97 97 0 (0) _
AT1G77800.3 11 Arabidopsis thaliana 0 737 99 99 0 (0) _
Os06g10690.1 7 Oryza sativa 0 1173 36 52 0 (0) _
Os06g10690.2 7 Oryza sativa 5E-159 974 36 51 0 (0) _
Os02g52960.1 7 Oryza sativa 1E-146 583 48 65 0 (0) _
Zm00001eb278990_P002 agpv5 Zea mays 0 1189 37 53 0 (0) _
Zm00001eb278990_P001 agpv5 Zea mays 0 1186 36 52 0 (0) _
GRMZM2G330024_P01 3.21 Zea mays 9E-180 1184 35 50 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	PHD(4) PHD_2(4) ScdA_N(2) zf-HC5HC2H(5) zf-HC5HC2H_2(3)
TargetP:	Cytoplasm (Class 3 C0.043; M0.324; S0.036; _0.837)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1375 aa (-cTP 1353)
Molecular Weight	151.69 kDA(-cTP )
PI	7.81(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1477	Detail								leaf [A. thaliana]	co-IP GST-ClpS stroma	clpc1 x clps (rep. 5)

* For details about the exprimental sources click here.

Published Proteomics Data

21533090(plasmodesmata-crude)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data