PPDB

 The Plant Proteome Database

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AT1G76860.1   Small nuclear ribonucleoprotein family protein
Lab Annot. small nuclear ribonucleoprotein, putative / snRNP, putative
Mapman: 27.1 RNA.processing
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G21190.1 11Arabidopsis thaliana2E-589790950 (0)_
AT2G47640.2 11Arabidopsis thaliana9E-109033606 (6)_
AT2G47640.3 11Arabidopsis thaliana9E-109033606 (6)_
Os01g64690.1 7Oryza sativa3E-5589949715 (15)_
Os05g24970.2 7Oryza sativa5E-109033602 (2)_
Os05g24970.1 7Oryza sativa5E-109033602 (2)_
Zm00001eb146730_P001 agpv5Zea mays4E-589690940 (0)_
GRMZM6G768049_P01 3.21Zea mays4E-5896909439 (39)_
v1_AC155610.2_FGP009 4a53Zea mays3E-174182879 (9)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF150_C(1) LSM(1)
TargetP: Cytoplasm (Class 2 C0.142; M0.170; S0.117; _0.835)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 98 aa (-cTP 96)
Molecular Weight 11.29 kDA(-cTP )
PI 4.71(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1357Detail       leaf [A. thaliana] total tissue - low mass region clpt1xclpt2
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1596Detail        [A. thaliana]  
2043Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2044Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2045Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2046Detail       Total leaf [A. thaliana] total soluble wt and prep1-1xprep2-1xoop
2246Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help