PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G76570.1   Chlorophyll A-B binding family protein
Lab Annot. LHCB7
Mapman: 1.1.1.1 PS.lightreaction.photosystem II.LHC-II
Curated Location thylakoid-integral (Pubmed: 23198870 18431481 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G27690.2 11Arabidopsis thaliana9E-6322050610 (0)S
AT3G27690.1 11Arabidopsis thaliana1E-6222050611430 (1392)C
AT2G05100.1 11Arabidopsis thaliana4E-6226544561491 (1449)C
Os09g12540.1 7Oryza sativa2E-15728275862 (2)C
Os01g41710.1 7Oryza sativa3E-602264862266 (266)C
Os01g52240.1 7Oryza sativa8E-602174962163 (163)C
GRMZM2G131489_P01 3.21Zea mays7E-16129073849 (9)C
v1_GRMZM2G131489_P01 4a53Zea mays7E-16129073849 (9)C
Zm00001eb309200_P001 agpv5Zea mays7E-16129073840 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Chloroa_b-bind(2)
TargetP: Chloroplast (Class 2 C0.758; M0.141; S0.014; _0.036)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon: 4 TMs
TAT position:
Length 327 aa (-cTP 263)
Molecular Weight 36.37 kDA(-cTP 29.33)
PI 8.28(-cTP 5.61)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help