PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G76010.1   Alba DNA/RNA-binding protein
Lab Annot. nucleic acid binding
Mapman: 27.3.67 RNA.regulation of transcription.putative transcription regulator
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G76010.2 11Arabidopsis thaliana03501001000 (0)_
AT1G20220.1 11Arabidopsis thaliana8E-89278647035 (30)_
AT3G07030.2 11Arabidopsis thaliana2E-5213561760 (0)_
Os09g37006.2 7Oryza sativa2E-73232576618 (18)_
Os09g37006.1 7Oryza sativa3E-73232576618 (18)_
Os04g34940.1 7Oryza sativa1E-63149697720 (20)_
Zm00001eb103890_P001 agpv5Zea mays3E-7023460670 (0)_
Zm00001eb103890_P002 agpv5Zea mays3E-7023460670 (0)_
v1_GRMZM2G146472_P03 4a53Zea mays1E-64143718125 (25)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Alba(1) API5(2) Rpp20(1)
TargetP: Cytoplasm (Class 2 C0.057; M0.213; S0.052; _0.815)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 350 aa (-cTP 315)
Molecular Weight 37.38 kDA(-cTP )
PI 9.78(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
1091Detail        [A. thaliana] R4Strep Complemented
1175Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1445Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 1)
1539Detail       leaf [A. thaliana] wild-type
1618Detail        [A. thaliana] m48
2236Detail       seedlings [A. thaliana] total tissue gfs9
2237Detail       seedlings [A. thaliana] total tissue gfs9
2238Detail       seedlings [A. thaliana] total tissue gfs9
2239Detail       seedlings [A. thaliana] total tissue gfs9
2240Detail       seedlings [A. thaliana] total tissue gfs9
2241Detail       seedlings [A. thaliana] total tissue gfs9
2242Detail       seedlings [A. thaliana] total tissue gfs9
2243Detail       seedlings [A. thaliana] total tissue gfs9
2244Detail       seedlings [A. thaliana] total tissue gfs9
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2254Detail       leaf [A. thaliana] total seedlings gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2257Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
19253305(phosphoproteins (etiolated seedling))
19816138(rosette leaves)
22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help