PPDB

The Plant Proteome Database

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AT1G75990.1   PAM domain (PCI/PINT associated module) protein

Lab Annot. 26S proteasome regulatory subunit S3 (RPN3b)
Mapman: 29.5.11.20.2* protein.degradation.ubiquitin.proteasome.26S
Curated Location cytosol
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G20200.1 11Arabidopsis thaliana04889196253 (107)_
Os08g43640.1 7Oryza sativa0484758622 (22)C
Os09g37000.1 7Oryza sativa0487758515 (15)_
Os08g43640.2 7Oryza sativa039281896 (6)_
GRMZM2G119761_P02 3.21Zea mays0297869226 (22)_
v1_GRMZM2G119761_P02 4a53Zea mays0297869231 (31)_
Zm00001eb202860_P001 agpv5Zea mays049175850 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: PCI(1) Rpn3_C(1) TPR_2(4)
TargetP: Cytoplasm (Class 3 C0.242; M0.055; S0.017; _0.827)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 487 aa (-cTP 438)
Molecular Weight 55.59 kDA(-cTP )
PI 8.53(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
352Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2215Detail       leaf [A. thaliana] total leaf tissue Clp P5 trap st
2247Detail       seedlings [A. thaliana] total tissue atg5
2249Detail       seedlings [A. thaliana] total tissue gfs9
2251Detail       seedlings [A. thaliana] total tissue wild-type
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2298Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2302Detail        [A. thaliana] Clp C1 WT
2305Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
17432890(leaf total membranes)
18463617(suspension cells-phosphorylated proteins)
19334764(plasma membrane (cell culture))
20516081(tagged-26S proteasome-affinity)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)

Comparative Proteomics Data


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