PPDB

The Plant Proteome Database

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AT1G75950.1   S phase kinase-associated protein 1

Lab Annot. SKP1 ( SKP1 HOMOLOGUE); ubiquitin-protein ligase - dually targeted to cytosol & nucleus
Mapman: 29.5.11.4.3.1 protein.degradation.ubiquitin.E3.SCF.SKP
Curated Location cytosol (Pubmed: 16333572 16283376 )
nucleus (Pubmed: 16333572 16283376 )

TAIR curated location: ubiquitin ligase complex & nucleus & spindle & phragmoplast11387208,11019805
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G42190.1 11Arabidopsis thaliana5E-83169748411 (10)_
AT4G34210.1 11Arabidopsis thaliana3E-8116072831 (1)S
AT4G34470.1 11Arabidopsis thaliana4E-8016172830 (0)S
Os09g36830.1 7Oryza sativa5E-72165698017 (17)_
Os11g26910.1 7Oryza sativa8E-67166758156 (56)_
Os08g28820.1 7Oryza sativa2E-6216157760 (0)_
Zm00001eb229260_P001 agpv5Zea mays5E-7115773850 (0)_
v1_GRMZM2G074282_P06 4a53Zea mays5E-71157738510 (10)_
GRMZM2G074282_P04 3.21Zea mays5E-71157738515 (15)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: FAM110_N(1) Skp1(3) Skp1_POZ(2)
TargetP: Cytoplasm (Class 5 C0.073; M0.068; S0.594; _0.703)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 160 aa (-cTP 152)
Molecular Weight 17.86 kDA(-cTP )
PI 4.47(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2246Detail       seedlings [A. thaliana] total tissue gfs9
2249Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

16358359(cell suspension (M&Skoog))
16502469(cell suspension-Cd-up)
16502469(cell suspension-CD-down)
17317660(Plasma Membrane proteome)
18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


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