PPDB

 The Plant Proteome Database

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AT1G75380.1   bifunctional nuclease in basal defense response 1
Lab Annot. UVR2 (DUF151 and UVR domain)
Mapman: 35.2 not assigned.unknown
Curated Location plastid (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G75380.3 11Arabidopsis thaliana0325100100104 (21)C
AT1G75380.2 11Arabidopsis thaliana0325100100104 (21)C
AT1G75380.4 11Arabidopsis thaliana03251001000 (0)C
Os08g26870.2 7Oryza sativa3E-12625466840 (0)_
Os08g26870.3 7Oryza sativa3E-12625466840 (0)_
Os08g26870.1 7Oryza sativa1E-12326064820 (0)_
GRMZM2G006468_P03 3.21Zea mays1E-12332154751 (1)C
GRMZM2G006468_P02 3.21Zea mays1E-12332154751 (1)C
v1_GRMZM2G006468_P04 4a53Zea mays1E-12332154753 (3)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF151(1) Peptidase_C71(1) UVR(1)
TargetP: Chloroplast (Class 4 C0.522; M0.312; S0.007; _0.084)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon: 1 TMs
TAT position:
Length 325 aa (-cTP 304)
Molecular Weight 36.17 kDA(-cTP 33.95)
PI 8.93(-cTP 8.64)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1198Detail       leaf [A. thaliana] co-IP beads only stromaclpr2-1
1265Detail       leaf [A. thaliana] co-IP SHOOT1 (rep. 3) thylakoid membraneshoot1 (null mutant)
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1635Detail       leaf [A. thaliana] Stroma stromaclpt1-2
2215Detail       leaf [A. thaliana] total leaf tissue Clp P5 trap st
2216Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2224Detail       leaf [A. thaliana] total leaf tissue Clp P3 strep
2226Detail       leaf [A. thaliana] total leaf tissue wild-type
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help