PPDB

 The Plant Proteome Database

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AT1G73530.1   RNA-binding (RRM/RBD/RNP motifs) family protein
Lab Annot. ORRM6 (editing factor)
Mapman: 27.1.5* RNA.processing.editing
Curated Location plastid stroma (Pubmed: 23198870 23487777 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G54580.1 11Arabidopsis thaliana5E-2510744597 (7)C
AT3G20930.1 11Arabidopsis thaliana6E-229447699 (9)C
AT5G06210.1 11Arabidopsis thaliana1E-2011040610 (0)M
Os04g49440.3 7Oryza sativa7E-388964830 (0)C
Os08g04440.1 7Oryza sativa1E-2410345648 (8)C
Os07g36490.1 7Oryza sativa8E-238847652 (2)M
Zm00001eb428060_P001 agpv5Zea mays7E-399167820 (0)C
GRMZM2G003897_P01 3.21Zea mays2E-2482546810 (10)M
Zm00001eb416760_P002 agpv5Zea mays2E-248254680 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Nup35_RRM(1) Nup35_RRM_2(1) RRM_1(1) RRM_7(1) START(1)
TargetP: Chloroplast (Class 4 C0.440; M0.051; S0.016; _0.145)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 181 aa (-cTP 137)
Molecular Weight 20.06 kDA(-cTP 15.58)
PI 10.02(-cTP 10.13)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
339Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1481Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1596Detail        [A. thaliana]  
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
19995723(chloroplast reference proteome)

Comparative Proteomics Data

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