PPDB

PPDB	The Plant Proteome Database

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AT1G73030.1 SNF7 family protein

Lab Annot.

CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1B (CHMP1B) SNF7
Mapman: 29.5.2 protein.degradation.autophagy; 31.4 cell.vesicle transport

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G17730.1 11 Arabidopsis thaliana 1E-143 203 95 99 1 (0) _
AT2G06530.1 11 Arabidopsis thaliana 3E-09 191 26 49 8 (6) _
AT2G06530.2 11 Arabidopsis thaliana 8E-09 164 25 51 0 (0) _
Os06g43590.3 7 Oryza sativa 3E-109 205 86 91 11 (11) _
Os06g43590.2 7 Oryza sativa 3E-109 205 86 91 11 (11) _
Os06g43590.4 7 Oryza sativa 8E-75 205 69 74 11 (11) _
v1_GRMZM2G117935_P01 4a53 Zea mays 3E-111 204 86 91 6 (5) _
v1_GRMZM2G117935_P02 4a53 Zea mays 3E-111 204 86 91 6 (5) _
GRMZM2G117935_P01 3.21 Zea mays 3E-111 204 86 91 5 (5) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF3886(1) DUF4363(2) Ham1p_like(2) Ist1(1) Snf7(2) TBCA(1)
TargetP:	Cytoplasm (Class 2 C0.241; M0.039; S0.078; _0.866)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	203 aa (-cTP 163)
Molecular Weight	22.69 kDA(-cTP )
PI	6.66(-cTP )

Experimental Evidence

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View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

18814325(cotyledons)
19546170(mature pollen grains)
22010978(Endosomal-sorting-interactome-VPS2.2)
21173025(root proteome)

Comparative Proteomics Data