PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G72220.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G33565.1 11 Arabidopsis thaliana 9E-36 109 57 69 0 (0) _
AT5G10380.1 11 Arabidopsis thaliana 1E-34 85 65 83 0 (0) M
AT3G03550.1 11 Arabidopsis thaliana 6E-31 217 39 52 0 (0) _
Os02g46600.1 7 Oryza sativa 1E-34 208 36 52 0 (0) _
Os04g50100.1 7 Oryza sativa 2E-33 268 31 46 0 (0) _
Os02g36330.1 7 Oryza sativa 1E-28 81 58 70 0 (0) _
Zm00001eb251210_P001 agpv5 Zea mays 3E-31 425 29 41 0 (0) _
GRMZM2G004480_P01 3.21 Zea mays 3E-31 425 29 41 0 (0) _
v1_GRMZM2G004480_P01 4a53 Zea mays 3E-31 425 29 41 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF3222(2) FANCL_C(1) PHD(1) Prok-RING_1(1) Prok-RING_4(2) Rad50_zn_hook(2) RING
TargetP:	Cytoplasm (Class 3 C0.045; M0.165; S0.088; _0.567)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	413 aa (-cTP 346)
Molecular Weight	45.35 kDA(-cTP )
PI	4.53(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data