PPDB

PPDB	The Plant Proteome Database

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AT1G72200.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G22500.1 11 Arabidopsis thaliana 9E-155 355 65 76 0 (0) S
AT3G05200.1 11 Arabidopsis thaliana 9E-59 391 36 52 1 (1) S
AT2G35000.1 11 Arabidopsis thaliana 4E-56 281 45 59 0 (0) S
Os09g29310.1 7 Oryza sativa 1E-43 163 48 66 0 (0) S
Os08g37760.1 7 Oryza sativa 7E-42 140 51 68 0 (0) M
Os02g52210.1 7 Oryza sativa 9E-41 280 34 49 0 (0) M
Zm00001eb101180_P001 agpv5 Zea mays 2E-48 136 55 73 0 (0) S
GRMZM2G015753_P01 3.21 Zea mays 2E-48 136 55 73 0 (0) S
v1_GRMZM2G015753_P01 4a53 Zea mays 2E-48 136 55 73 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Baculo_RING(1) FANCL_C(1) NAF(1) Prok-RING_1(2) RINGv(1) zf-ANAPC11(1) zf-C3HC4(
TargetP:	Cytoplasm (Class 5 C0.015; M0.423; S0.032; _0.446)
Predotar:
Subcel. Location:
TM-HMM prediction:	2 TMs
Aramemnon:	1 TMs
TAT position:
Length	404 aa (-cTP 363)
Molecular Weight	44.63 kDA(-cTP )
PI	8.52(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data