PPDB

PPDB	The Plant Proteome Database

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AT1G72175.1 E3 ubiquitin-protein ligase RNF170-like protein (DUF 1232)

Lab Annot.

RING/U-box protein with domain of unknown function (DUF 1232)
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G72175.2 11 Arabidopsis thaliana 7E-106 151 100 100 0 (0) M
AT1G22510.1 11 Arabidopsis thaliana 8E-99 185 87 95 4 (4) C
AT1G22510.2 11 Arabidopsis thaliana 1E-74 155 88 95 4 (4) M
Os03g62250.1 7 Oryza sativa 6E-61 154 57 78 0 (0) M
GRMZM2G170137_P01 3.21 Zea mays 2E-78 182 57 77 0 (0) _
v1_GRMZM2G170137_P04 4a53 Zea mays 1E-31 94 52 71 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF1232(1) Prok-RING_4(1) zf-ANAPC11(1) zf-C3HC4(1) zf-C3HC4_2(1) zf-C3HC4_3(1)
TargetP:	Cytoplasm (Class 3 C0.238; M0.025; S0.055; _0.706)
Predotar:
Subcel. Location:
TM-HMM prediction:	2 TMs
Aramemnon:	2 TMs
TAT position:
Length	185 aa (-cTP 165)
Molecular Weight	20.92 kDA(-cTP )
PI	8.37(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

19334764(plasma membrane (cell culture))

Comparative Proteomics Data