PPDB

 The Plant Proteome Database

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AT1G71460.1   Pentatricopeptide repeat (PPR-like) superfamily protein
Lab Annot. pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G18750.1 11Arabidopsis thaliana1E-10659732531 (0)C
AT4G35130.1 11Arabidopsis thaliana2E-9851832550 (0)C
AT3G57430.1 11Arabidopsis thaliana3E-9763731510 (0)C
Os12g10184.1 7Oryza sativa067146640 (0)C
Os03g56850.1 7Oryza sativa1E-10457131550 (0)M
Os09g07780.1 7Oryza sativa7E-9758631510 (0)M
GRMZM2G132140_P01 3.21Zea mays0662456422 (22)C
v1_GRMZM2G132140_P01 4a53Zea mays0662456415 (15)C
Zm00001eb411060_P001 agpv5Zea mays066245640 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: PPR(14) PPR_1(12) PPR_2(12) PPR_3(8) PPR_long(4) TPR_14(6) TPR_4(2)
TargetP: Chloroplast (Class 4 C0.562; M0.090; S0.008; _0.231)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 689 aa (-cTP 640)
Molecular Weight 77.49 kDA(-cTP 72.17)
PI 9.46(-cTP 9.30)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

 21533090(plasmodesmata-crude)

Comparative Proteomics Data

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