PPDB

 The Plant Proteome Database

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AT1G71310.1   cobalt ion binding protein
Lab Annot. RAD52-1
Mapman: 28.2 DNA.repair
Curated Location not plastid (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G71310.2 11Arabidopsis thaliana3E-13017610010057 (36)M
AT1G71310.3 11Arabidopsis thaliana1E-931319910039 (24)M
AT5G47870.1 11Arabidopsis thaliana4E-411305170102 (58)C
Os01g65560.1 7Oryza sativa4E-7514768834 (4)M
Os03g63450.2 7Oryza sativa1E-4113253680 (0)C
Os03g63450.1 7Oryza sativa2E-3913651660 (0)C
GRMZM2G005061_P01 3.21Zea mays8E-7214669824 (4)M
Zm00001eb366350_P001 agpv5Zea mays8E-7214669820 (0)M
v1_GRMZM2G005061_P01 4a53Zea mays8E-7214669824 (4)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Rad52_Rad22(1)
TargetP: Mitochondria (Class 2 C0.094; M0.860; S0.009; _0.053)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 176 aa (-cTP 149)
Molecular Weight 19.48 kDA(-cTP )
PI 8.55(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1518Detail       leaf [A. thaliana] wild-type
1519Detail       leaf [A. thaliana] wild-type
1520Detail       leaf [A. thaliana] wild-type
1523Detail       leaf [A. thaliana] wild-type
1651Detail       leaf [A. thaliana] plastoglobules plastoglobulewild-type
2003Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2004Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2005Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2007Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
20018591(Co2+ binding (mitochondria - cell culture))
19114538(guard cells Arabidopsis leaf)
21841088(mitochondria (2DE native gel))
21173025(root proteome)
21472856(mitochondrial-2DEgels-uncurated)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help