PPDB

PPDB	The Plant Proteome Database

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AT1G69935.1 short hypocotyl in white light1

Lab Annot.

Encodes a nuclear localized serine-arginine-aspartate-rich protein that acts as a negative regulator of photomorphogenesis.
Mapman: 35.2 not assigned.unknown

Curated Location

nucleus

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G69935.2 11 Arabidopsis thaliana 5E-103 153 100 100 0 (0) C
AT4G33780.1 11 Arabidopsis thaliana 2E-24 90 52 73 1 (1) C
Os03g12930.1 7 Oryza sativa 9E-14 80 41 68 0 (0) C
Zm00001eb009500_P001 agpv5 Zea mays 1E-14 85 43 68 0 (0) C
GRMZM2G012126_P01 3.21 Zea mays 1E-14 85 43 68 0 (0) C
v1_GRMZM2G012126_P01 4a53 Zea mays 1E-14 85 43 68 0 (0) C

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Rhabdo_ncap(1)
TargetP:	Chloroplast (Class 1 C0.979; M0.024; S0.015; _0.049)
Predotar:
Subcel. Location:	Thylakoid membrane
TM-HMM prediction:	1 TMs
Aramemnon:	2 TMs
TAT position:
Length	192 aa (-cTP 142) (-lTP 57)
Molecular Weight	21.37 kDA(-cTP 15.85)(-lTP 6.14)
PI	9.78(-cTP 5.40)(-lTP 10.021)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data