PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT1G69800.1   Cystathionine beta-synthase (CBS) protein
Lab Annot. CBS domain-containing protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G69800.2 11Arabidopsis thaliana044710010020 (14)M
AT1G69800.3 11Arabidopsis thaliana036198980 (0)_
AT3G48530.1 11Arabidopsis thaliana4E-83430365418 (12)_
Os01g40420.1 7Oryza sativa4E-17942964820 (0)_
Os01g40420.2 7Oryza sativa4E-9421862800 (0)_
Os01g40420.3 7Oryza sativa4E-9421862800 (0)_
GRMZM2G051764_P03 3.21Zea mays5E-172430628279 (5)_
Zm00001eb160610_P001 agpv5Zea mays5E-17243062820 (0)_
Zm00001eb160610_P002 agpv5Zea mays5E-17243062820 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CBS(4)
TargetP: Cytoplasm (Class 3 C0.371; M0.044; S0.024; _0.825)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 3 TMs
TAT position:
Length 447 aa (-cTP 383)
Molecular Weight 47.82 kDA(-cTP )
PI 5.25(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2301Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help