PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT1G69640.1 sphingoid base hydroxylase 1

Lab Annot.

Mapman: 11.8.1 lipid metabolism.exotics (steroids, squalene etc).sphingolipids

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G14290.1 11 Arabidopsis thaliana 8E-162 259 77 90 0 (0) S
AT1G14290.2 11 Arabidopsis thaliana 4E-119 184 83 91 0 (0) _
AT2G29390.6 11 Arabidopsis thaliana 3E-12 152 34 49 0 (0) _
Os06g12250.1 7 Oryza sativa 1E-140 255 71 84 0 (0) S
Os02g51150.1 7 Oryza sativa 2E-138 256 70 82 0 (0) S
Os02g51150.2 7 Oryza sativa 3E-133 256 69 80 0 (0) S
v1_GRMZM2G124276_P01 4a53 Zea mays 6E-143 255 74 84 0 (0) S
GRMZM2G124276_P01 3.21 Zea mays 6E-143 255 74 84 0 (0) S
Zm00001eb372420_P001 agpv5 Zea mays 6E-143 255 74 84 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AA_permease(1) Cation_ATPase_C(1) FA_hydroxylase(2)
TargetP:	Secreted (Class 2 C0.014; M0.041; S0.884; _0.267)
Predotar:
Subcel. Location:
TM-HMM prediction:	3 TMs
Aramemnon:	4 TMs
TAT position:
Length	260 aa (-cTP 177)
Molecular Weight	29.82 kDA(-cTP )
PI	6.49(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data